1. J. Singh, J. Hanson, K. Paliwal, and Y. Zhou, RNA secondary structure prediction using an ensemble of two-dimensional deep neural networks and transfer learning,Nature Communications10, 5407 (2019).

2. Z. Zhang, P. Xiong, T. Zhang, J. Wang, J. Zhan, and Y. Zhou, Accurate inference of the full base-pairing structure of RNA by deep mutational scanning and covariation-induced deviation of activity,Nucleic Acids Research, 48:1451-1465 (2020).

3. J. Zhan, H. Jia, E. A. Semchenko, Y. Bian, A. M. Zhou, Z. Li, Y. Yang, J. Wang, S. Sarkar, M. Totsika, H. Blanchard, F. E.-C. Jen, Q. Ye, T. Haselhorst, M. P. Jennings, K. L. Seib, and Y. Zhou, Self-derived structure-disrupting peptides targeting methionine aminopeptidase in pathogenic bacteria; a new strategy to generate antimicrobial peptides,FASEB J., 33: 2095–2104 (2019).

4. S. Xu, J. Zhan, B. Man, S. Jiang, W. Yue, S. Gao, C. Guo, H. Liu, Z. Li, J. Wang, and Y. Zhou, Real-time reliable determination of binding kinetics of DNA hybridization using a multi-channel graphene biosensor,Nature Communications8, 14902 (2017).

5. Z. Li, Y. Yang, J. Zhan, L. Dai and Y. Zhou, Energy Functions in De Novo Protein Design: Current Challenges and Future Prospects,Ann. Rev. Biophysics42, 315-335 (2013).